We should move to a D-based build system to build dmd/druntime/phobos/d-programming-language/tools. 

Reasons, in case it's not obvious: 

1) DRY: makefile is full of repetitions
2) cross platform: different makefiles for different architectures are needed (even win32 vs win64!)
3) safety: makefile happily ignores that $VAR variables are not set, and can create havoc; likewise tools/update.sh is a bash script and may not stop on 1st error.
4) tools/update.sh doesn't work out of the box on OSX last i checked (I made a pull request for that some time back: https://github.com/timotheecour/d-programming-language.org/commit/557a2befa74ddfe99ee5c0e12e7c3d028f27d276 )

Even a bad D-based build system will be better than a makefile, but it's not hard to write a reasonable one at least for the particular task of building dmd/druntime/phobos/d-programming-language/tools. It'll lower the entry point for people to contribute to dmd/phobos by making rebuilding trivial.

Here's how it'd work:

1) a mixed D-based/makefile build that'll work 'from scratch' via bootstrapping:
1a) dmd: first uses a makefile to build dmd+druntime
1b) rdmd built from a D file using dmd
1c) phobos, d-programming-language, tools built from a D file using rdmd

2) a pure D-based build that'll work using an existing dmd binary (eg distributed binary)
that's the one most will use.