Thread overview
How to open a compressed file in gz format ?
Mar 15, 2021
sharkloc
Mar 16, 2021
frame
March 15, 2021
I want to read the content(file.gz) line by line,the following code is not friendly to large files of hundreds of Gb, and the memory overhead is also very large.


import std.stdio;
import std.process;
import std.string;

void main(string[] args){

	string fileName = args[1];
	string command = "gzip -dc " ~ fileName ;
	auto dmd = executeShell(command);

	if(dmd.status != 0){
		writeln("Compilation failed:\n", dmd.output);
	}
	else{
		auto all=chomp(dmd.output).split("\n");
	    writeln(typeid(all));
	    for(int i=0; i<all.length; i++){
		    writeln(all[i]);
		}
	}

}
March 16, 2021
On Monday, 15 March 2021 at 01:36:08 UTC, sharkloc wrote:
> I want to read the content(file.gz) line by line,the following code is not friendly to large files of hundreds of Gb, and the memory overhead is also very large.

You can use the internal zlib instead of a shell. This example is using stdin but you can it also replace with a file handle:

import std.zlib;
import std.stdio;
import std.conv : to;
import std.array : split;
import std.algorithm.iteration : map;

void main() {

    UnCompress decmp = new UnCompress;
    string buf;

    // read 4096 bytes of compressed stream at iteration
    foreach (chunk; stdin.byChunk(4096).map!(x => decmp.uncompress(x))) {

        // chunk has unknown length of decompressed data
        auto lines = to!string(chunk).split("\n");

        foreach (i, line; lines[0 .. $]) {
            if (i == 0) {
                // if there is something in buffer
                // it belongs to previos line
                writeln(buf ~ line);

                // reset buffer
                buf.length = 0;

            }
            else if (i + 1 == lines.length) {
                // the last line is maybe incomplete, we never
                // directly output it
                buf = line;

            }
            else {
                writeln(line);
            }
        }
    }

    // rest
    if (buf.length) {
        write(buf);
    }
}


March 16, 2021
On 3/14/21 9:36 PM, sharkloc wrote:
> I want to read the content(file.gz) line by line,the following code is not friendly to large files of hundreds of Gb, and the memory overhead is also very large.
> 
> 
> import std.stdio;
> import std.process;
> import std.string;
> 
> void main(string[] args){
> 
>      string fileName = args[1];
>      string command = "gzip -dc " ~ fileName ;
>      auto dmd = executeShell(command);
> 
>      if(dmd.status != 0){
>          writeln("Compilation failed:\n", dmd.output);
>      }
>      else{
>          auto all=chomp(dmd.output).split("\n");
>          writeln(typeid(all));
>          for(int i=0; i<all.length; i++){
>              writeln(all[i]);
>          }
>      }
> 
> }

It's not super-user-friendly, but iopipe excels at this kind of stuff (untested):

// dub dependencies: [iopipe, io]
import iopipe.bufpipe;
import iopipe.textpipe;
import iopipe.zip;
import iopipe.refc;
import std.io;

import std.stdio;

void main(string[] args) {
   string fileName = args[1];
   auto lineRange = File(fileName) // open file
       .refCounted // make it copyable
       .bufd // buffer it
       .unzip // unzip it
       .assumeText // assume the binary data is utf8 text
       .byLineRange!true; // true = discard newlines

   foreach(line; lineRange)
       writeln(line);
}

-Steve